Journal of Computational Science & Engineering

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ISSN 1710-4068                ACSS home   Editorial Board    Journal's home     

    J. Comput. Sci. Eng.  Vol. 44 (2019) 1081-1102
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QSAR Study of new synthetic oxazole-4-carboxamides as the inhibitor of GSK-3

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Qingao Qin£¬Xingyuan Wang£¬Peijian Zhang£¬Hongzong Si

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J. Comput. Sci. Eng. 44 (2019) 1081-1093¡ªPublished  10 December 2019 ¡¡ ¡¡
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Abstract: A series of reported recently oxazole-4-carboxamides as the inhibitor of glycogen synthase kinase-3 (GSK-3) were firstly used to establish quantitative structural activity relationship models. Heuristic method was applied to select efficient molecular descriptors. At the same time, a linear model with correlation coefficient (R=0.93) and cross validation correlation coefficient (RCV=0.90) was built. In addition, gene expression programing and back-propagation artificial neural network methods were carried out to establish nonlinear models. As a result, a five molecular descriptors nonlinear model with correlation coefficient (R) and mean square error (MSE) of 0.95 and 0.15 for the training set, 0.95 and 0.17 for the test set was developed by GEP. Moreover, a more robust nonlinear model with of 0.97 for the training set, 0.95 for the test set, 0.89 for the validation set and 0.96 for the whole data set was built by BPANN. As we can see, both GEP and BPANN are promising methods to explore nonlinear relationships for good statistical performance. Expectantly, these models can give assistance to discover and design new inhibitors of GSK-3 in the future.

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Keywords: Neurodegenerative disease (ND); Quantitative structure activity relationship (QSAR); Gene expression programming (GEP); Back-error propagation artificial neural network (BPANN); Heuristic method (HM).

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Quantitative structure activity relationship study of hexacyclic skeletons compounds based on gene expression programming

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Kai Leng, Peijian Zhang, Hongzong Si, Honglin Zhai

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J. Comput. Sci. Eng. 44 (2019) 1094-1102¡ªPublished  10 December 2019  ¡¡ ¡¡
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Abstract: The quantitative structure-activity relationship models of 33 tetrahydroisoquinoline¨Ctetrahydrocarboline hybrid skeletons derivatives were established with gene expression programming (GEP) extended from genetic algorithms and genetic programming. The QSAR model predicts antitumor activity through descriptors. These descriptors were calculated in CODESSA software and selected from descriptors¡¯ pool based on heuristic method. And 4 descriptors were selected to establish linear regression (MLR) model. A comparison between the result of proposed linear and nonlinear regression showed the superiority of QSAR modeling by GEP method over MLR.

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Keywords: Antitumor activity; Heuristic method; Quantitative structure activity relationship; Heuristic method; Gene expression programming.

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